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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.
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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
COX19YLL018C-Acytoplasm, nucleusassembly of protein complexes; cation transport (Na, K, Ca , NH4, etc.)Protein required for cytochrome c oxidase assembly4.22--1.77*
CSH1YBR161WvacuoleC-compound and carbohydrate utilization; glycolipid biosynthesis; budding, cell polarity and filament formationProbable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase3.293.482.851.69*****
RPF2YKR081Cnucleolus, nucleusrRNA processing; ribosomal proteins; RNA bindingEssential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit39.202.952.061.49*
SFH1YLR321CnucleusDNA conformation modification (e.g. chromatin); mitotic cell cycle and cell cycle control; transcriptional control; protein binding; organization of chromosome structureSubunit of the RSC chromatin remodeling complex required for kinetochore function in chromosome segregation3.322.351.821.55
SSA2YLL024Ccytoplasm, nucleusprotein folding and stabilization; protein targeting, sorting and translocation; ATP binding; mitochondrial transport; vesicular transport (Golgi network, etc.)ATP binding protein involved in protein folding and vacuolar import of proteins5.739.704.312.19*
YIL166CYIL166Callantoin and allantoate transport; transport facilitationPutative protein with similarity to the allantoate permease (Dal5p) subfamily of the major facilitator superfamily4.692.813.37-*
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
COX19CSH1RPF2SFH1SSA2YIL166C
COX191.000.040.710.670.010.13
CSH10.041.00-0.32-0.230.360.80
RPF20.71-0.321.000.72-0.16-0.17
SFH10.67-0.230.721.000.16-0.14
SSA20.010.36-0.160.161.000.50
YIL166C0.130.80-0.17-0.140.501.00
 Correlations in cdc15:
COX19CSH1RPF2SFH1SSA2YIL166C
COX19ERRERRERRERRERRERR
CSH1ERR1.00-0.41-0.69-0.170.63
RPF2ERR-0.411.000.32-0.130.01
SFH1ERR-0.690.321.000.23-0.69
SSA2ERR-0.17-0.130.231.000.14
YIL166CERR0.630.01-0.690.141.00
 Correlations in cdc28:
COX19CSH1RPF2SFH1SSA2YIL166C
COX19ERRERRERRERRERRERR
CSH1ERR1.000.090.29-0.46-0.04
RPF2ERR0.091.00-0.08-0.22-0.34
SFH1ERR0.29-0.081.00-0.01-0.62
SSA2ERR-0.46-0.22-0.011.00-0.02
YIL166CERR-0.04-0.34-0.62-0.021.00
 Correlations in alpha-38:
COX19CSH1RPF2SFH1SSA2YIL166C
COX191.00-0.12-0.070.180.20ERR
CSH1-0.121.00-0.33-0.200.25ERR
RPF2-0.07-0.331.000.190.36ERR
SFH10.18-0.200.191.000.07ERR
SSA20.200.250.360.071.00ERR
YIL166CERRERRERRERRERRERR
SCEPTRANS is optimized for firefox cite YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab Department of Biochemistry UT SOUTHWESTERN
2005-2008 Andrzej Kudlicki
a.kudlicki@utmb.edu