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SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.
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6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
CYC7YEL039Ccytoplasmelectr transpt and membr.-assoc'd energy; respiration; electron / hydrogen transport; stress responseCytochrome c isoform 220.603.517.122.82*
GZF3YJL110Ccytoplasm, nucleusregulation of nitrogen utilization; general transcription activities; transcriptional controlGATA zinc finger protein and Dal80p homolog that negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding3.953.032.002.07*
PUP1YOR157Ccytoplasm, nucleusprotein processing (proteolytic); proteasomal degradation (ubiquitin/proteasomal pathway)Endopeptidase with trypsin-like activity that cleaves after basic residues2.972.532.991.72*
RIB2YOL066Ccytoplasmpyrimidine nucleotide mtbl; mtbl of cyclic and unusual nucleotides; biosynthesis of vitamins, cofactors, and prosthetic groupsDRAP deaminase4.392.251.44-*
UTR1YJR049Ccytoplasm, nucleusnucleotide mtbl; phosphate utilization; mtbl of vitamins, cofactors, prosth. grps; homeostasis of metal ions (Na, K, Ca etc.)ATP-NADH kinase3.062.851.79-*
YLR365WYLR365WUnclassified ProteinsDubious open reading frame unlikely to encode a protein14.5512.646.41-
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
CYC7GZF3PUP1RIB2UTR1YLR365W
CYC71.00-0.470.51-0.270.46-0.42
GZF3-0.471.00-0.560.81-0.200.40
PUP10.51-0.561.00-0.300.70-0.35
RIB2-0.270.81-0.301.00-0.040.19
UTR10.46-0.200.70-0.041.00-0.24
YLR365W-0.420.40-0.350.19-0.241.00
 Correlations in cdc15:
CYC7GZF3PUP1RIB2UTR1YLR365W
CYC71.00-0.040.75-0.170.34-0.28
GZF3-0.041.00-0.25-0.48-0.410.46
PUP10.75-0.251.000.320.71-0.27
RIB2-0.17-0.480.321.000.50-0.12
UTR10.34-0.410.710.501.00-0.45
YLR365W-0.280.46-0.27-0.12-0.451.00
 Correlations in cdc28:
CYC7GZF3PUP1RIB2UTR1YLR365W
CYC71.000.300.480.70-0.120.36
GZF30.301.000.26-0.04-0.21-0.19
PUP10.480.261.000.49-0.210.04
RIB20.70-0.040.491.000.030.22
UTR1-0.12-0.21-0.210.031.00-0.50
YLR365W0.36-0.190.040.22-0.501.00
 Correlations in alpha-38:
CYC7GZF3PUP1RIB2UTR1YLR365W
CYC71.00-0.240.31ERRERRERR
GZF3-0.241.000.34ERRERRERR
PUP10.310.341.00ERRERRERR
RIB2ERRERRERRERRERRERR
UTR1ERRERRERRERRERRERR
YLR365WERRERRERRERRERRERR
SCEPTRANS is optimized for firefox cite YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab Department of Biochemistry UT SOUTHWESTERN
2005-2008 Andrzej Kudlicki
a.kudlicki@utmb.edu