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SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.

Random genes are now displayed. Use the left panel to select genes, right panel to view transcription features.  

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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
CUP5YEL027WERprotein targeting, sorting and translocation; cation transport (Na, K, Ca , NH4, etc.); electron / hydrogen transport; transport ATPases; vacuolar transport; endocytosis; detoxification; homeostasis of metal ions (Na, K, Ca etc.); homeostasis of protons; vacuole or lysosomeProteolipid subunit of the vacuolar H(+)-ATPase V0 sector (subunit c; dicyclohexylcarbodiimide binding subunit)2.035.822.64-
EMP70YLR083Cvacuoletransport facilitation; vesicular transport (Golgi network, etc.)Protein whose 24kDa cleavage product is found in endosome-enriched membrane fractions8.313.322.062.33**
PCS60YBR222Ccytoplasmlipid, fatty acid and isoprenoid biosynthesis; nucleotide bindingPeroxisomal AMP-binding protein7.783.161.822.84*
YCRWDELTA8YCRWDELTA84.01---
YGRWSIGMA7YGRWSIGMA74.76---
YNL224CYNL224Ccytoplasm, nucleusUnclassified ProteinsProtein of unknown function2.392.602.311.96*
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
CUP5EMP70PCS60YCRWDELTA8YGRWSIGMA7YNL224C
CUP51.000.47-0.260.130.350.03
EMP700.471.00-0.46-0.38-0.110.07
PCS60-0.26-0.461.00-0.01-0.270.29
YCRWDELTA80.13-0.38-0.011.000.540.03
YGRWSIGMA70.35-0.11-0.270.541.00-0.19
YNL224C0.030.070.290.03-0.191.00

 Correlations in cdc15:
CUP5EMP70PCS60YCRWDELTA8YGRWSIGMA7YNL224C
CUP51.000.620.85ERRERR-0.00
EMP700.621.000.77ERRERR-0.37
PCS600.850.771.00ERRERR-0.29
YCRWDELTA8ERRERRERRERRERRERR
YGRWSIGMA7ERRERRERRERRERRERR
YNL224C-0.00-0.37-0.29ERRERR1.00

 Correlations in cdc28:
CUP5EMP70PCS60YCRWDELTA8YGRWSIGMA7YNL224C
CUP51.000.410.01ERRERR0.42
EMP700.411.00-0.21ERRERR0.57
PCS600.01-0.211.00ERRERR0.44
YCRWDELTA8ERRERRERRERRERRERR
YGRWSIGMA7ERRERRERRERRERRERR
YNL224C0.420.570.44ERRERR1.00

 Correlations in alpha-38:
CUP5EMP70PCS60YCRWDELTA8YGRWSIGMA7YNL224C
CUP5ERRERRERRERRERRERR
EMP70ERR1.00-0.08ERRERR-0.35
PCS60ERR-0.081.00ERRERR0.48
YCRWDELTA8ERRERRERRERRERRERR
YGRWSIGMA7ERRERRERRERRERRERR
YNL224CERR-0.350.48ERRERR1.00

SCEPTRANS is optimized for firefox cite YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab Department of Biochemistry UT SOUTHWESTERN
2005-2008 Andrzej Kudlicki
a.kudlicki@utmb.edu